Stem-loop ptc-MIR6462f

Accession

MI0025476

Description

Populus trichocarpa ptc-MIR6462f precursor miRNA

Literature search

1 open access papers mention ptc-MIR6462f
(2 sentences)

Sequence

86 reads, 2.0 reads per million, 8 experiments

gggaucggcaggAGACAAAAAUGGCAUAAGAGAgguacagugggaggcaggagaaagaccaauaucugccacccuucuuucucUCUUAUGCGUUUUUGUCUCUcgccggucac
..(((((((.(((((((((((((.(((((((((((......(((.(((((...............))))).))).....)))))))))))))))))))))))).)))))))..

Structure

gg       a             G           uacagu   a     gagaaa 
  gaucggc ggAGACAAAAAUG CAUAAGAGAgg      ggg ggcag      g
  ||||||| ||||||||||||| |||||||||||      ||| |||||      a
  cuggccg UCUCUGUUUUUGC GUAUUCUcucu      ccc ccguc      c
ca       c             -           -uucuu   a     uauaac 

Annotation confidence Medium

Genome context

CM000341.2: 24270440-24270552 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from ptc-MIR6462f

Mature ptc-miR6462f-5p

• Accession: MIMAT0055696
• Description: Populus trichocarpa ptc-miR6462f-5p mature miRNA
• Sequence: 13 - AGACAAAAAUGGCAUAAGAGA - 33
• Evidence: experimental ; unknown

Mature ptc-miR6462f-3p

• Accession: MIMAT0030376
• Description: Populus trichocarpa ptc-miR6462f-3p mature miRNA
• Sequence: 84 - UCUUAUGCGUUUUUGUCUCU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233