Stem-loop ptc-MIR160h

Accession

MI0002208

Description

Populus trichocarpa ptc-MIR160h precursor miRNA

Literature search

6 open access papers mention ptc-MIR160h
(22 sentences)

Sequence

gaucccugugUGCCUGGCUCCCUGCAUGCCAuuugcauagcucaucagaacgucgguggccuugguggauggcgugcaacgagucaugcaugcuguga
.......((((((.((((((..((((((((((((((..((.(((((........))))).))..))))))))))))))..)))))).)))))).....

Structure

gaucccu      C      CC              au  c     aga 
       gugUGC UGGCUC  UGCAUGCCAuuugc  ag ucauc   a
       |||||| ||||||  ||||||||||||||  || |||||    
       cguacg acugag  acgugcgguaggug  uc ggugg   c
--agugu      u      ca              gu  c     cug 

Annotation confidence Not enough data

Genome context

CM000352.2: 6921900-6921997 [-]

Mature ptc-miR160h

• Accession: MIMAT0001914
• Description: Populus trichocarpa ptc-miR160h mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGCAUGCCA - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203