Stem-loop ptc-MIR169ab

Accession

MI0002247

Description

Populus trichocarpa ptc-MIR169ab precursor miRNA

Literature search

9 open access papers mention ptc-MIR169ab
(12 sentences)

Sequence

cauguuuggCAGCCAAGGAAGACUUGCCCgucaucgucuuagcugguuccaguguauuacuuagcaccuuuuguuugguuuuggggaagcaccuugacuagcugaca
.................((.(((......))).))(((..((((((((...((((....(((((.(((........))).)))))...))))...))))))))))).

Structure

-------------------------------------------------------cauguuuggCAGCCAAG  A   UU 
                                                                        GA GAC  G
                                                                        || |||   
                                                                        cu cug  C
acagucgaucaguuccacgaagggguuuugguuuguuuuccacgauucauuaugugaccuuggucgauucug  a   CC 

Annotation confidence Not enough data

Genome context

CM000343.2: 6018895-6019001 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169ab

Mature ptc-miR169ab

• Accession: MIMAT0001953
• Description: Populus trichocarpa ptc-miR169ab mature miRNA
• Sequence: 10 - CAGCCAAGGAAGACUUGCCC - 29
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604