Stem-loop ptc-MIR169ae

Accession

MI0002250

Description

Populus trichocarpa ptc-MIR169ae precursor miRNA

Literature search

9 open access papers mention ptc-MIR169ae
(13 sentences)

Sequence

101100 reads, 1770.0 reads per million, 9 experiments

cuuguuuggUAGCCAAGGACGACUUGCCCAccaccaucuuaguuggguccaauauauuacugggcaccuuccauuugguuuUGGGCAAGCACCUUGGCUAGCUGaca
..((((.(.(((((((((..(.((((((((..((((.....(..(((((((.........))))).))..)....))))..))))))))).))))))))).).))))

Structure

cu    u g         AC A        cc    ucuua uu  -     aua 
  uguu g UAGCCAAGG  G CUUGCCCA  acca     g  gg gucca   u
  |||| | |||||||||  | ||||||||  ||||     |  || |||||   a
  acaG C AUCGGUUCC  C GAACGGGU  uggu     c  cc cgggu   u
--    U G         -A -        uu    -uuac uu  a     cau 

Annotation confidence High

Genome context

CM000346.2: 7227918-7228024 [+]

Mature ptc-miR169ae-5p

• Accession: MIMAT0001956
• Description: Populus trichocarpa ptc-miR169ae-5p mature miRNA
• Sequence: 10 - UAGCCAAGGACGACUUGCCCA - 30
• Evidence: not_experimental

Mature ptc-miR169ae-3p

• Accession: MIMAT0055599
• Description: Populus trichocarpa ptc-miR169ae-3p mature miRNA
• Sequence: 82 - UGGGCAAGCACCUUGGCUAGCUG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604