Accession
MI0025495
Description
Populus trichocarpa
ptc-MIR7839 precursor miRNA
Sequence
427
reads,
7.0
reads per million, 9 experiments
aauaaguaaaacaauaugugUGAUUCCUUCCAAUUCCAUUUGcuuaguuuauuuucaucgucccuuaaagaaauuaagaacaAGUGGCAUUGGAGGUAUCCCauguaauguuuuuuacugug
....(((((((((.((((((.(((..((((((((.(((((((((((((((.(((............))).))))))))..))))))).)))))))).))).)))))).)))..))))))...
....(((((((((.((((((.(((..((((((((.(((((((((((((((.(((............))).))))))))..))))))).)))))))).))).)))))).)))..))))))...
Structure
aaua -- a U UC U -- a ucauc
aguaaa aca uaugug GAU CUUCCAAU CCAUUUG cuuaguuu uuu g
|||||| ||| |||||| ||| |||||||| ||||||| |||||||| |||
ucauuu ugu auguaC CUA GGAGGUUA GGUGAac gaauuaaa aaa u
-gug uu a C -U C aa g uuccc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
CM000337.2: 22901250-22901371 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptc-MIR7839
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ptc-miR7839-5p
| Accession | MIMAT0055699 |
| Description | Populus trichocarpa ptc-miR7839-5p mature miRNA |
| Sequence | 21 - UGAUUCCUUCCAAUUCCAUUUG - 42 |
| Evidence |
experimental
unknown |
Mature ptc-miR7839-3p
| Accession | MIMAT0030395 |
| Description | Populus trichocarpa ptc-miR7839-3p mature miRNA |
| Sequence | 83 - AGUGGCAUUGGAGGUAUCCC - 102 |
| Evidence |
experimental
Illumina [1] |
References
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