Stem-loop ptc-MIR167h

Accession

MI0002242

Description

Populus trichocarpa ptc-MIR167h precursor miRNA

Literature search

7 open access papers mention ptc-MIR167h
(48 sentences)

Sequence

119 reads, 2.0 reads per million, 8 experiments

cgcuauuaguUGAAGCUGCCAACAUGAUCUGagcuuuccuuaauuuuccuauacaggaaagacuAGAUCAUGUGGCAGUUUCACCUauuga
......(((.(((((((((((.(((((((((..(((((((..((......))..)))))))..)))))))))))))))))))).)))....

Structure

cgcuau   u           A         ag       ua  uu 
      uag UGAAGCUGCCA CAUGAUCUG  cuuuccu  au  u
      ||| ||||||||||| |||||||||  |||||||  ||   
      aUC ACUUUGACGGU GUACUAGAu  gaaagga  ua  c
--aguu   C           -         ca       ca  uc 

Annotation confidence Not enough data

Genome context

CM000349.2: 2408396-2408486 [+]

Mature ptc-miR167h-5p

• Accession: MIMAT0001948
• Description: Populus trichocarpa ptc-miR167h-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAACAUGAUCUG - 31
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR167h-3p

• Accession: MIMAT0022895
• Description: Populus trichocarpa ptc-miR167h-3p mature miRNA
• Sequence: 65 - AGAUCAUGUGGCAGUUUCACCU - 86
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034