Stem-loop ptc-MIR394a

Accession

MI0002313

Description

Populus trichocarpa ptc-MIR394a precursor miRNA

Literature search

1 open access papers mention ptc-MIR394a
(3 sentences)

Sequence

83606 reads, 1400.0 reads per million, 9 experiments

ucauguggguuuugcaaaggguuucuuacagaguuuuUUGGCAUUCUGUCCACCUCCaucuguagaaacuacaaguuguucuacuuucuggaggUGGGCAUACUGCCAACUGAGCUcuguuggucucucuuuguaaaacccucguga
(((((.(((((((((((((((...((.(((((((((.((((((...((((((((((((...((((((.(........)))))))....))))))))))))...))))))..))))))))).))...))))))))))))))).)))))

Structure

     u               uuu  u         -u      UUC            -ucu      a uac 
ucaug ggguuuugcaaaggg   cu acagaguuu  UUGGCA   UGUCCACCUCCa    guagaa c   a
||||| |||||||||||||||   || |||||||||  ||||||   ||||||||||||    |||||| |    
agugc cccaaaauguuucuc   gg ugucUCGAG  AACCGU   ACGGGUggaggu    caucuu g   a
     u               ucu  u         UC      CAU            cuuu      - uug 

Annotation confidence Low

Genome context

CM000338.2: 831734-831880 [-]

Mature ptc-miR394a-5p

• Accession: MIMAT0002019
• Description: Populus trichocarpa ptc-miR394a-5p mature miRNA
• Sequence: 38 - UUGGCAUUCUGUCCACCUCC - 57
• Evidence: not_experimental

Mature ptc-miR394a-3p

• Accession: MIMAT0006783
• Description: Populus trichocarpa ptc-miR394a-3p mature miRNA
• Sequence: 95 - UGGGCAUACUGCCAACUGAGCU - 116
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151