Stem-loop ptc-MIR396g

Accession

MI0002331

Description

Populus trichocarpa ptc-MIR396g precursor miRNA

Literature search

7 open access papers mention ptc-MIR396g
(19 sentences)

Sequence

102537 reads, 1609.0 reads per million, 9 experiments

uugcaugcuuUUCCACGGCUUUCUUGAACUuggcacucaagagacaugagaguaaagggcuaggcuuucuuuucuauuccuuucguucuuugaaauuuuccuguucaaagaauccauacauaucagucucuuuaguacaaagCUCAAGAAAGCCGUGGGAAAauauga
...((((.(((((((((((((((((((.(((.(.(((.(((((((.(((..((((((((.((((........)))).)))))..((((((((((.........))))))))))...)))...)))))))))).))).).))).))))))))))))))))))).)))).

Structure

uug    c                   A   g c   c       a   -ga   aagggcuaggcuuucuuuucuauuccuuuc          auu 
   caug uuUUCCACGGCUUUCUUGA CUu g acu aagagac uga   gua                              guucuuugaa   u
   |||| ||||||||||||||||||| ||| | ||| ||||||| |||   |||                              ||||||||||   u
   guau AAAGGGUGCCGAAAGAACU gaa c uga uucucug acu   cau                              uaagaaacuu   c
--a    a                   C   a a   u       -   aua   ---------------------------acc          guc 

Annotation confidence High

Genome context

CM000343.2: 6411634-6411801 [-]

Mature ptc-miR396g-5p

• Accession: MIMAT0002037
• Description: Populus trichocarpa ptc-miR396g-5p mature miRNA
• Sequence: 11 - UUCCACGGCUUUCUUGAACU - 30
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR396g-3p

• Accession: MIMAT0022911
• Description: Populus trichocarpa ptc-miR396g-3p mature miRNA
• Sequence: 143 - CUCAAGAAAGCCGUGGGAAA - 162
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034