Stem-loop ptc-MIR167c

Accession

MI0002237

Description

Populus trichocarpa ptc-MIR167c precursor miRNA

Literature search

6 open access papers mention ptc-MIR167c
(49 sentences)

Sequence

2773 reads, 48.0 reads per million, 9 experiments

cacuagcaguUGAAGCUGCCAGCAUGAUCUaaauuaaccuccuucuuuaucaaggauggauuaGAUCAUGUGGUAGUUUCAccugcuga
...((((((.(((((((((((.((((((((((.......(((.(((((...))))).)))))))))))))))))))))))).)))))).

Structure

cac      u           G          auuaacc   u     a 
   uagcag UGAAGCUGCCA CAUGAUCUaa       ucc ucuuu  
   |||||| ||||||||||| ||||||||||       ||| ||||| u
   gucguc ACUUUGAUGGU GUACUAGauu       agg aggaa  
--a      c           -          -------   u     c 

Annotation confidence High

Genome context

CM000341.2: 22458162-22458250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR167c

Mature ptc-miR167c-5p

• Accession: MIMAT0001943
• Description: Populus trichocarpa ptc-miR167c-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCU - 30
• Evidence: not_experimental

Mature ptc-miR167c-3p

• Accession: MIMAT0060823
• Description: Populus trichocarpa ptc-miR167c-3p mature miRNA
• Sequence: 64 - GAUCAUGUGGUAGUUUCA - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604