Stem-loop ptc-MIR169b

Accession

MI0002252

Description

Populus trichocarpa ptc-MIR169b precursor miRNA

Literature search

9 open access papers mention ptc-MIR169b
(16 sentences)

Sequence

aagauugaugCAGCCAAGGAUGACUUGCCGAcgacucguuuuugcuuccaucaauauacgcauaauuaagaagagaugaauccguuGGCAGGUUGUUCUUGGCUACauuuuuc
..((..((((.(((((((((((((((((((((((.((((((((.(((....................))).)))))))).).)))))))))))))))))))))).))))..))

Structure

aa  uu    C                      - c        g   ccaucaaua 
  ga  gaug AGCCAAGGAUGACUUGCCGAcg a ucguuuuu cuu         u
  ||  |||| |||||||||||||||||||||| | |||||||| |||          
  cu  uuaC UCGGUUCUUGUUGGACGGuugc u aguagaga gaa         a
--  uu    A                      c a        a   uuaauacgc 

Annotation confidence Not enough data

Genome context

CM000349.2: 4145219-4145331 [+]

Mature ptc-miR169b-5p

• Accession: MIMAT0001958
• Description: Populus trichocarpa ptc-miR169b-5p mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; miRNAseq [2]

Mature ptc-miR169b-3p

• Accession: MIMAT0022898
• Description: Populus trichocarpa ptc-miR169b-3p mature miRNA
• Sequence: 87 - GGCAGGUUGUUCUUGGCUAC - 106
• Evidence: experimental ; miRNAseq [2]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034