Stem-loop ptc-MIR482d

Accession

MI0022007

Description

Populus trichocarpa ptc-MIR482d precursor miRNA

Literature search

9 open access papers mention ptc-MIR482d
(133 sentences)

Sequence

12727 reads, 196.0 reads per million, 9 experiments

agagaagaggggaaagaGAUGGAGGACGAGGAAGUUUCUggacauggguugguuugcaagaaaauaagauuuuugaacucucugauauuguucauggaaaacaguuuucUUGCCGACCCCACCCAUGCCAAUGauuuccucagcuuccucucucucccuguuuccuucucu
(((((((.(((((.(((((.(((((..(((((((((..(((.(((((((.((((.((((((((((....(((((((((...........))))).))))....)))))))))).))))..))))))))))..)))))))))..)))))))))).))))).....)))))))

Structure

       ----a     a     U     AC         UC   a       -u    u          aaga    -     ucuc 
agagaag     gggga agaGA GGAGG  GAGGAAGUU  Ugg caugggu  gguu gcaagaaaau    uuuu ugaac    u
|||||||     ||||| ||||| |||||  |||||||||  ||| |||||||  |||| ||||||||||    |||| |||||    g
ucucuuc     ucccu ucucu ccuuc  cuccuuuaG  ACC GUACCCA  CCAG CGUUcuuuug    aagg acuug    a
       cuuug     c     -     ga         UA   -       CC    C          acaa    u     uuau 

Annotation confidence Low

Genome context

CM000346.2: 12814668-12814838 [-]

Mature ptc-miR482d-5p

• Accession: MIMAT0025234
• Description: Populus trichocarpa ptc-miR482d-5p mature miRNA
• Sequence: 18 - GAUGGAGGACGAGGAAGUUUCU - 39
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR482d-3p

• Accession: MIMAT0025235
• Description: Populus trichocarpa ptc-miR482d-3p mature miRNA
• Sequence: 110 - UUGCCGACCCCACCCAUGCCAAUG - 133
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233