Stem-loop ptc-MIR159b

Accession

MI0002196

Description

Populus trichocarpa ptc-MIR159b precursor miRNA

Literature search

11 open access papers mention ptc-MIR159b
(53 sentences)

Sequence

957984 reads, 15628.0 reads per million, 9 experiments

gauuauggaguggAGCUCCUUGAAGUCCAAUAGaagcuccugcuggguagaucgagcugcugagcuaugaaucccacagcccuaucaccaucagucauuuugaugggccugcggcuugcauaucucaggagcuuuauuaccuaauguuagaucuuuuUUUGGAUUGAAGGGAGCUCUAaaccuuuga
......((..(((((((((((..(((((((.(((((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))).))....)))).))))).)))))..)))))))..))..)).))))).)))))))..)))))))))))..)).....

Structure

gauuau  ag           GA       U     c  cu  --       auc     g     c    aauc  a   c       ccauc 
      gg  uggAGCUCCUU  AGUCCAA AGaag uc  gc  uggguag   gagcu cugag uaug    cc cag ccuauca     a
      ||  |||||||||||  ||||||| ||||| ||  ||  |||||||   ||||| ||||| ||||    || ||| |||||||     g
      cc  AUCUCGAGGGA  UUAGGUU uuuuc ag  ug  auccauu   uucga gacuc auac    gg guc ggguagu     u
-aguuu  aa           AG       U     u  au  ua       -au     g     u    guuc  c   c       uuuac 

Annotation confidence High

Genome context

CM000351.2: 4261680-4261866 [+]

Mature ptc-miR159b-5p

• Accession: MIMAT0055569
• Description: Populus trichocarpa ptc-miR159b-5p mature miRNA
• Sequence: 14 - AGCUCCUUGAAGUCCAAUAG - 33
• Evidence: experimental ; unknown

Mature ptc-miR159b-3p

• Accession: MIMAT0001902
• Description: Populus trichocarpa ptc-miR159b-3p mature miRNA
• Sequence: 158 - UUUGGAUUGAAGGGAGCUCUA - 178
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203