Stem-loop ptc-MIR7830

Accession

MI0025489

Description

Populus trichocarpa ptc-MIR7830 precursor miRNA

Sequence

uuuaagggggUGAUCUAGAGAACCGUUGCUuuuguuaaaguuguugaggcuuuuugugcaauuuuguccucuuucuauuauagaaaagcaacgguucucuagaucacccauuaaag
(((((..((((((((((((((((((((((((((.(..........(((((...............).))))..........).)))))))))))))))))))))))))).))))).

Structure

-     gg                          g uaaaguuguu    - uuuuug 
 uuuaa  gggUGAUCUAGAGAACCGUUGCUuuu u          gagg c      u
 |||||  |||||||||||||||||||||||||| |          |||| |      g
 aaauu  cccacuagaucucuuggcaacgaaaa a          cucc g      c
g     -a                          g uauuaucuuu    u uuuuaa 

Annotation confidence Not enough data

Genome context

CM000351.2: 5977842-5977957 [+]

Mature ptc-miR7830

• Accession: MIMAT0030389
• Description: Populus trichocarpa ptc-miR7830 mature miRNA
• Sequence: 11 - UGAUCUAGAGAACCGUUGCU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233