Stem-loop ptc-MIR164a

Accession

MI0002212

Description

Populus trichocarpa ptc-MIR164a precursor miRNA

Literature search

10 open access papers mention ptc-MIR164a
(43 sentences)

Sequence

94836 reads, 1563.0 reads per million, 9 experiments

gguuccuugcUGGAGAAGCAGGGCACGUGCAaaauccugaugaagugcuuacacuuugCACGCGCUCUUCUUCUCCAACacgggc
...(((.((.((((((((.(((((.(((((((...........((((....))))))))))).))))).)))))))).)).))).

Structure

ggu   u  c        C     A       aauccugauga    c 
   ucc ug UGGAGAAG AGGGC CGUGCAa           agug u
   ||| || |||||||| ||||| |||||||           ||||  
   ggg aC ACCUCUUC UCUCG GCACguu           ucac u
--c   c  A        U     C       -----------    a 

Annotation confidence High

Genome context

CM000338.2: 16570527-16570611 [+]

Mature ptc-miR164a-5p

• Accession: MIMAT0001918
• Description: Populus trichocarpa ptc-miR164a-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR164a-3p

• Accession: MIMAT0055575
• Description: Populus trichocarpa ptc-miR164a-3p mature miRNA
• Sequence: 59 - CACGCGCUCUUCUUCUCCAAC - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203