Stem-loop ptc-MIR390b

Accession

MI0002306

Description

Populus trichocarpa ptc-MIR390b precursor miRNA

Literature search

5 open access papers mention ptc-MIR390b
(14 sentences)

Sequence

36595 reads, 627.0 reads per million, 9 experiments

agaaucuguuAAGCUCAGGAGGGAUAGCGCCcuaaggauaaucaugggcucuuuuuaugugguuuuugauucucaguggCGCUAUCCAUCCUGAGUUUCAUugcuu
..........((((((((((.((((((((((((.((((...(((.((((((.......).))))).))))))).)).)))))))))).))))))))))........

Structure

agaaucuguu          G          -  a    uaa   u     - uu 
          AAGCUCAGGA GGAUAGCGCC cu agga   uca gggcu c  u
          |||||||||| |||||||||| || ||||   ||| ||||| |  u
          UUUGAGUCCU CCUAUCGCgg ga ucuu   agu uuugg g  u
--uucguUAC          A          u  c    ---   u     u ua 

Annotation confidence High

Genome context

CM000342.2: 7867985-7868090 [+]

Mature ptc-miR390b-5p

• Accession: MIMAT0002012
• Description: Populus trichocarpa ptc-miR390b-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCGCC - 31
• Evidence: not_experimental

Mature ptc-miR390b-3p

• Accession: MIMAT0055626
• Description: Populus trichocarpa ptc-miR390b-3p mature miRNA
• Sequence: 80 - CGCUAUCCAUCCUGAGUUUCAU - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604