Stem-loop ptc-MIR171c

Accession

MI0002279

Description

Populus trichocarpa ptc-MIR171c precursor miRNA

Literature search

6 open access papers mention ptc-MIR171c
(11 sentences)

Sequence

111745 reads, 1898.0 reads per million, 9 experiments

aaaagaaagCGAUGUUGGUGAGGUUCAAUCcgaagacggauuuacacgugaaaguaauuguaaaauacgaucucagaUUGAGCCGCGCCAAUAUCACUUUcuca
...((((((.((((((((((.(((((((((.((.((((..((((((.((.......))))))))...)).)))).))))))))).)))))))))).))))))..

Structure

aaa      C          A         c  a  -  -ga      c  ga 
   agaaag GAUGUUGGUG GGUUCAAUC ga ga cg   uuuaca gu  a
   |||||| |||||||||| ||||||||| || || ||   |||||| ||  a
   ucUUUC CUAUAACCGC CCGAGUUag cu cu gc   aaaugu ua  g
-ac      A          G         a  -  a  aua      -  au 

Annotation confidence High

Genome context

CM000342.2: 4686630-4686733 [-]

Mature ptc-miR171c-5p

• Accession: MIMAT0055612
• Description: Populus trichocarpa ptc-miR171c-5p mature miRNA
• Sequence: 10 - CGAUGUUGGUGAGGUUCAAUC - 30
• Evidence: experimental ; unknown

Mature ptc-miR171c-3p

• Accession: MIMAT0001985
• Description: Populus trichocarpa ptc-miR171c-3p mature miRNA
• Sequence: 78 - UUGAGCCGCGCCAAUAUCACUUU - 100
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203