Stem-loop ptc-MIR7823

Accession

MI0025482

Description

Populus trichocarpa ptc-MIR7823 precursor miRNA

Sequence

auucaaauuuauuucaaguucaugcaugcaacccaaauuuauaauuguccacaccugugccaaauuuaaauuucccgcauuagguaaguagauauuuugucuccauucaggcaaccaaaaaaaacugaaaaaaucuauauugcuaaauuugacacagguggacaaauauaaauugaggUUGCAUGCAUGAACUUGAAAUacgcucuagc
.........((((((((((((((((((((((((..((((((((.((((((..(((((((.((((((((.((((.((......)).))))(((((...)))))...(((((..............)))))..............)))))))).))))))))))))).))))))))..)))))))))))))))))))))))).........

Structure

auucaaauu                        ca        a      ac       c        -----------------------------------------------------a    c  gc 
         uauuucaaguucaugcaugcaacc  aauuuaua uugucc  accugug caaauuua                                                      auuu cc  a
         ||||||||||||||||||||||||  |||||||| ||||||  ||||||| ||||||||                                                      |||| ||   
         aUAAAGUUCAAGUACGUACGUUgg  uuaaauau aacagg  uggacac guuuaaau                                                      ugaa gg  u
cgaucucgc                        ag        a      --       a        cguuauaucuaaaaaagucaaaaaaaaccaacggacuuaccucuguuuuauaga    u  au 

Annotation confidence Not enough data

Genome context

CM000340.2: 20393549-20393757 [+]

Mature ptc-miR7823

• Accession: MIMAT0030382
• Description: Populus trichocarpa ptc-miR7823 mature miRNA
• Sequence: 179 - UUGCAUGCAUGAACUUGAAAU - 199
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233