Accession
MI0021975
Description
Populus trichocarpa
ptc-MIR6438b precursor miRNA
Sequence
771
reads,
13.0
reads per million, 9 experiments
cuugguuacugauauuauuuugaaccgucaugucaauuauugguuauauaUCGACUGAAAAUGAAAGCUAUUucacuauucugugcacacaaugcuugaaacauuaaucaugguuuuugaaaguauuggagcaUUGUACACAGAAUAGGUGAAAUaacuuucauuuucauucgauacgcaacuaaaauuguaaauauaguucagucucaucuuggaagccaag
(((((((.((((.......((((((.((..(..(((((.((((((...((((((.((((((((((((.(((((((((((((((((...(((((((((.((((.((..(((.......))))))).)).))))))))).))))))))).)))))))).)))))))))))).))))))...)))))))))))..)..)).)))))).......)))).)))))))
(((((((.((((.......((((((.((..(..(((((.((((((...((((((.((((((((((((.(((((((((((((((((...(((((((((.((((.((..(((.......))))))).)).))))))))).))))))))).)))))))).)))))))))))).))))))...)))))))))))..)..)).)))))).......)))).)))))))
Structure
a uauuauu c ca gu a aua C C - cac g - a aa ug
cuugguu cuga uugaac gu u caauu uugguu uaUCGA UGAAAAUGAAAG UAUUucac uauucugug acaaugcuu aa ac uu uca g
||||||| |||| |||||| || | ||||| |||||| |||||| |||||||||||| |||||||| ||||||||| ||||||||| || || || ||| u
gaaccga gguu gacuug ua a guuaa aaucaa auagcu acuuuuacuuuc aUAAAGUG AUAAGACAC UGUUacgag uu ug aa agu u
a cuacucu a ua au - cgc u a G --A g a - -- uu
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
CM000341.2: 1237589-1237811 [+]
Database links
Mature ptc-miR6438b-5p
| Accession | MIMAT0055669 |
| Description | Populus trichocarpa ptc-miR6438b-5p mature miRNA |
| Sequence | 51 - UCGACUGAAAAUGAAAGCUAUU - 72 |
| Evidence |
experimental
unknown |
Mature ptc-miR6438b-3p
| Accession | MIMAT0025197 |
| Description | Populus trichocarpa ptc-miR6438b-3p mature miRNA |
| Sequence | 134 - UUGUACACAGAAUAGGUGAAAU - 155 |
| Evidence |
experimental
miRNAseq [1], Illumina [2] |
References
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