Stem-loop ptc-MIR6438b

Accession

MI0021975

Description

Populus trichocarpa ptc-MIR6438b precursor miRNA

Sequence

cuugguuacugauauuauuuugaaccgucaugucaauuauugguuauauaucgacugaaaaugaaagcuauuucacuauucugugcacacaaugcuugaaacauuaaucaugguuuuugaaaguauuggagcaUUGUACACAGAAUAGGUGAAAUaacuuucauuuucauucgauacgcaacuaaaauuguaaauauaguucagucucaucuuggaagccaag
(((((((.((((.......((((((.((..(..(((((.((((((...((((((.((((((((((((.(((((((((((((((((...(((((((((.((((.((..(((.......))))))).)).))))))))).))))))))).)))))))).)))))))))))).))))))...)))))))))))..)..)).)))))).......)))).)))))))

Structure

       a    uauuauu      c  ca gu     a      aua      c            c        -         cac         g  -  a  aa   ug 
cuugguu cuga       uugaac gu  u  caauu uugguu   uaucga ugaaaaugaaag uauuucac uauucugug   acaaugcuu aa ac uu  uca  g
||||||| ||||       |||||| ||  |  ||||| ||||||   |||||| |||||||||||| |||||||| |||||||||   ||||||||| || || ||  |||  u
gaaccga gguu       gacuug ua  a  guuaa aaucaa   auagcu acuuuuacuuuc aUAAAGUG AUAAGACAC   UGUUacgag uu ug aa  agu  u
       a    cuacucu      a  ua au     -      cgc      u            a        G         --A         g  a  -  --   uu 

Annotation confidence Not enough data

Genome context

CM000341.2: 1237589-1237811 [+]

Mature ptc-miR6438b

• Accession: MIMAT0025197
• Description: Populus trichocarpa ptc-miR6438b mature miRNA
• Sequence: 134 - UUGUACACAGAAUAGGUGAAAU - 155
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233