Stem-loop ptc-MIR7817b

Accession

MI0025479

Description

Populus trichocarpa ptc-MIR7817b precursor miRNA

Sequence

auuuggugacugucucgggacagaaaagacaaaggcgguaggaaagagcgacacgucucuuuaucucuuguuuuggaaguauaaauucacuccaaaacuauuggauauuuauuucuaugucuccgucuuucuaaccaaacauguuucuauucccacaaucuuugUCUCUUCUGUUCCUGAACGGUaaccgaac
.((((((.(((((.(((((((((((.(((((((((.(((.(((((((..((.((((.....(((((...((((((((.((........))))))))))....))))).........)))).))..))))))).))).....(((..........))).))))))))).))))).))))))))))).)))))).

Structure

a      g     c      -     a         ---------------------c   a       gc  c    ----cucuu     -cuu        a  aua 
 uuuggu acugu ucggga cagaa agacaaagg                      ggu ggaaaga  ga acgu         uaucu    guuuugga gu   a
 |||||| ||||| |||||| ||||| |||||||||                      ||| |||||||  || ||||         |||||    |||||||| ||    
 aagcca UGGCA AGUCCU GUCUU UCUguuucu                      cca ucuuucu  cu ugua         auagg    caaaaccu ca   a
c      a     -      U     C         aacacccuuaucuuuguacaaa   a       gc  c    ucuuuauuu     uuau        -  cuu 

Annotation confidence Not enough data

Genome context

CM000337.2: 15618173-15618365 [+]

Mature ptc-miR7817b

• Accession: MIMAT0030379
• Description: Populus trichocarpa ptc-miR7817b mature miRNA
• Sequence: 165 - UCUCUUCUGUUCCUGAACGGU - 185
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233