Stem-loop ptc-MIR169v

Accession

MI0002272

Description

Populus trichocarpa ptc-MIR169v precursor miRNA

Literature search

9 open access papers mention ptc-MIR169v
(12 sentences)

Sequence

cguguuuggUAGCCAAGGAUGACUUGCCCAcuccauugaaagaguuuuucaagcauaugguaguguagaacuuuucuuugguucugggcagucaucuuggcuaugcugac
...(((..(((((((((.((((((.(((((..(((..(((.(((((((....((((......))))))))))))))..)))...))))))))))))))))))))...)))

Structure

cgu   -ug         G      U     -cu   uu   a       ucaa    au 
   guu   gUAGCCAAG AUGACU GCCCA   cca  gaa gaguuuu    gcau  g
   |||   ||||||||| |||||| |||||   |||  ||| |||||||    ||||   
   cag   uaucgguuc uacuga cgggu   ggu  cuu uucaaga    ugug  g
---   ucg         -      -     cuu   uu   -       ----    au 

Annotation confidence Not enough data

Genome context

CM000345.2: 7559813-7559922 [+]

Mature ptc-miR169v

• Accession: MIMAT0001978
• Description: Populus trichocarpa ptc-miR169v mature miRNA
• Sequence: 10 - UAGCCAAGGAUGACUUGCCCA - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604