Stem-loop ptc-MIR7840

Accession

MI0025497

Description

Populus trichocarpa ptc-MIR7840 precursor miRNA

Sequence

uuauagugcuCAAGGAGUAAUUAGUGACAUCuuauuaauuacauccuaagcucaucuugaagaaagagacagacacacaaaggaaagagaaaaugaaacucauggcccaucaaaagcgauuagaauaacccuaccuaagauaucucucuuguacuuguaucuauuuuuuuuuaaaguggaucaaaggacuagcuaauaagaugucacuaguuacuucuucaacaccauaaa
((((.(((...((((((((((((((((((((((((((.(((..((((....((((.(((((((((((...(((.(((...((..((((((..((((...)))).((.........))..((((...........))))......))))))...))))).))).))))))))))).)))).....)))).))).))))))))))))))))))))))))))...))).)))).

Structure

-    a   cuC                          a   ca    -aagc    c           gac   c   caa  -ga      ---------------------------------------aa    a 
 uuau gug   AAGGAGUAAUUAGUGACAUCuuauua uua  uccu     ucau uugaagaaaga   aga aca   ag   aagaga                                         auga  
 |||| |||   |||||||||||||||||||||||||| |||  ||||     |||| |||||||||||   ||| |||   ||   ||||||                                         |||| a
 aaua cac   uucuucauugaucacuguagaauaau gau  agga     ggug aauuuuuuuuu   ucu ugu   uc   uucucu                                         uacu  
a    c   aac                          c   -c    aacua    a           --a   a   ---  aug      cuauagaauccaucccaauaagauuagcgaaaacuacccgg    c 

Annotation confidence Not enough data

Genome context

CM000345.2: 7737213-7737443 [+]

Mature ptc-miR7840

• Accession: MIMAT0030397
• Description: Populus trichocarpa ptc-miR7840 mature miRNA
• Sequence: 11 - CAAGGAGUAAUUAGUGACAUC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233