Stem-loop ptc-MIR6468

Accession

MI0021978

Description

Populus trichocarpa ptc-MIR6468 precursor miRNA

Sequence

guaaugcuaaaagccccaaaaguuggaacccaaauGUUUUCCCUGAAUCACUCCCAccauugauuggugggcuccaugcaccaauuaaacagugGGAGUGAUUCAGGGAACCCAUucaggcucaucggacucuuagguuugauuaguaugc
...((((((((((((.....((((.((.((..((((..(((((((((((((((((((..((((((((((.........))))))))))...)))))))))))))))))))..))))..))....)).))))....)))))..)))))))..

Structure

gua       --     ccaaa    g  ---a  ca    UU                   -ca          ggc 
   augcuaa  aagcc     aguu ga    cc  aauG  UUCCCUGAAUCACUCCCAc   uugauuggug   u
   |||||||  |||||     |||| ||    ||  ||||  |||||||||||||||||||   ||||||||||   c
   uaugauu  uuugg     ucag cu    gg  uUAC  AAGGGACUUAGUGAGGgug   aauuaaccac   c
-cg       ag     -auuc    g  acuc  ac    CC                   aca          gua 

Annotation confidence Not enough data

Genome context

CM000341.2: 21920795-21920945 [-]

Mature ptc-miR6468-3p

• Accession: MIMAT0025201
• Description: Populus trichocarpa ptc-miR6468-3p mature miRNA
• Sequence: 95 - GGAGUGAUUCAGGGAACCCAU - 115
• Evidence: experimental ; miRNAseq [1], Illumina [2]

Mature ptc-miR6468-5p

• Accession: MIMAT0027337
• Description: Populus trichocarpa ptc-miR6468-5p mature miRNA
• Sequence: 36 - GUUUUCCCUGAAUCACUCCCA - 56
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233