Stem-loop ptc-MIR1446a

Accession

MI0007042

Description

Populus trichocarpa ptc-MIR1446a precursor miRNA MIR1446

Gene
family

RF00954; MIR1446

Literature search

4 open access papers mention ptc-MIR1446a
(8 sentences)

Sequence

83421 reads, 1441.0 reads per million, 9 experiments

ccaacuucUUCUGAACUCUCUCCCUCAAccgcuacucuagagcuuggcaauccuugucgauuguuucuguguagCGGUUGAGGUGAGGGGUUCAGAacauguugg
(((((...((((((((((.((((((((((((((((..(((((....((((((......))))))))))).))))))))))))).)))))))))))))...)))))

Structure

     uuc          U   -             uc     cuug      cu 
ccaac   UUCUGAACUC CUC CCUCAAccgcuac  uagag    gcaauc  u
|||||   |||||||||| ||| |||||||||||||  |||||    ||||||   
gguug   aAGACUUGGG GAG GGAGUUGGCgaug  gucuu    uguuag  g
     uac          -   U             -u     ----      cu 

Annotation confidence Medium

Genome context

CM000348.2: 11674408-11674512 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ptc-MIR1446a

Mature ptc-miR1446a-5p

• Accession: MIMAT0006004
• Description: Populus trichocarpa ptc-miR1446a-5p mature miRNA
• Sequence: 9 - UUCUGAACUCUCUCCCUCAA - 28
• Evidence: experimental ; cloned [1]

Mature ptc-miR1446a-3p

• Accession: MIMAT0055660
• Description: Populus trichocarpa ptc-miR1446a-3p mature miRNA
• Sequence: 75 - CGGUUGAGGUGAGGGGUUCAGA - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151