Stem-loop ptc-MIR171m

Accession

MI0007033

Description

Populus trichocarpa ptc-MIR171m precursor miRNA

Literature search

6 open access papers mention ptc-MIR171m
(11 sentences)

Sequence

1158 reads, 20.0 reads per million, 9 experiments

gaagcagacauggCGUGGUAUUGAUCCGGCUCAUCUucuguauuugcaucagaaguucuucgcugaagaCGAGCCGAAUCAAUAUCACUCUuguacgcuuc
(((((..(((.((.(((((((((((.((((((..((((((.........)))))).(((((...))))).)))))).))))))))))))).)))..)))))

Structure

     ag   u  C           C      -------------AU      uau 
gaagc  aca gg GUGGUAUUGAU CGGCUC               CUucug   u
|||||  ||| || ||||||||||| ||||||               ||||||   u
cuucg  ugu CU CACUAUAACUA GCCGAG               gaagac   g
     ca   U  -           A      Cagaagucgcuucuu      uac 

Annotation confidence High

Genome context

CM000348.2: 2197358-2197458 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR171m

Mature ptc-miR171m-5p

• Accession: MIMAT0055656
• Description: Populus trichocarpa ptc-miR171m-5p mature miRNA
• Sequence: 14 - CGUGGUAUUGAUCCGGCUCAUCU - 36
• Evidence: experimental ; unknown

Mature ptc-miR171m-3p

• Accession: MIMAT0005995
• Description: Populus trichocarpa ptc-miR171m-3p mature miRNA
• Sequence: 70 - CGAGCCGAAUCAAUAUCACUCU - 91
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151