Stem-loop ptc-MIR167e

Accession

MI0002239

Description

Populus trichocarpa ptc-MIR167e precursor miRNA

Literature search

6 open access papers mention ptc-MIR167e
(51 sentences)

Sequence

6361 reads, 109.0 reads per million, 9 experiments

cacuaguaguUGAAGCUGCCAGCAUGAUCUGaacuuuccuuaauuuuccuauacgggaaagacuaGAUCAUGUGGUAGUUUCAUCUauuga
...((((((.(((((((((((.(((((((((..(((((((..((......))..)))))))..)))))))))))))))))))).)))))).

Structure

cac      u           G         aa       ua  uu 
   uaguag UGAAGCUGCCA CAUGAUCUG  cuuuccu  au  u
   |||||| ||||||||||| |||||||||  |||||||  ||   
   guuaUC ACUUUGAUGGU GUACUAGau  gaaaggg  ua  c
--a      U           -         ca       ca  uc 

Annotation confidence High

Genome context

CM000341.2: 3575879-3575969 [+]

Mature ptc-miR167e-5p

• Accession: MIMAT0001945
• Description: Populus trichocarpa ptc-miR167e-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: not_experimental

Mature ptc-miR167e-3p

• Accession: MIMAT0055596
• Description: Populus trichocarpa ptc-miR167e-3p mature miRNA
• Sequence: 66 - GAUCAUGUGGUAGUUUCAUCU - 86
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604