Stem-loop ptc-MIR164c

Accession

MI0002214

Description

Populus trichocarpa ptc-MIR164c precursor miRNA

Literature search

8 open access papers mention ptc-MIR164c
(39 sentences)

Sequence

94713 reads, 1561.0 reads per million, 9 experiments

uagcucuugcUGGAGAAGCAGGGCACGUGCAagcucucuccucaggcuuuccuugCACGUGCUCCCCUUCUCCAACaugggu
..((((.((.((((((((..(((((((((((((......((...)).....)))))))))))))..)))))))).)).))))

Structure

ua    u  c        CA             cucucu  u 
  gcuc ug UGGAGAAG  GGGCACGUGCAag      cc  
  |||| || ||||||||  |||||||||||||      || c
  uggg aC ACCUCUUC  CUCGUGCACguuc      gg  
--    u  A        CC             -cuuuc  a 

Annotation confidence High

Genome context

CM000349.2: 945053-945134 [-]

Mature ptc-miR164c-5p

• Accession: MIMAT0001920
• Description: Populus trichocarpa ptc-miR164c-5p mature miRNA
• Sequence: 11 - UGGAGAAGCAGGGCACGUGCA - 31
• Evidence: experimental ; cloned [1]

Mature ptc-miR164c-3p

• Accession: MIMAT0055577
• Description: Populus trichocarpa ptc-miR164c-3p mature miRNA
• Sequence: 56 - CACGUGCUCCCCUUCUCCAAC - 76
• Evidence: experimental ; unknown

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203