Stem-loop ptc-MIR7831

Accession

MI0025490

Description

Populus trichocarpa ptc-MIR7831 precursor miRNA

Sequence

gggaagaauacccaguuaguUACAUGUAGAGACCACCAAACccaaaguuucaguucacuuucugacagaacgaacccuaacucaaccuuuucucacucgagcagucacagggacaaaccaucuucaaaaacccuugggcuucgauuggagugguaaaagugagauaggacucucuuagaaggugaaguuuggguuugguggccacuacauguaauugguauucuuccucgcugcc
((((((((((((.....((((((((((((.(.((((((((((((((.(......(((((((((((.(((......((((.((((..(((((.((((((.(((((((.(((((...................)))))))))..).)).)))))).))))))))).))))..))).)))))))))))).)))))))))))))).).)))))))))))))))))))))))).......

Structure

-------            caguu            A A              g uucagu           c   acgaac    a    ac     c      g  - --    a     acaaacca 
       gggaagaauacc     aguUACAUGUAG G CCACCAAACccaaa u      ucacuuucuga aga      ccua cuca  cuuuu ucacuc ag c  aguc caggg        u
       ||||||||||||     |||||||||||| | |||||||||||||| |      ||||||||||| |||      |||| ||||  ||||| |||||| || |  |||| |||||        c
       uccuucuuaugg     uuaauguacauc c ggugguuuggguuu a      aguggaagauu ucu      ggau gagu  gaaaa ggugag uu g  ucgg guucc        u
ccgucgc            -----            a c              g ------           c   ----ca    a    --     u      g  a cu    -     caaaaacu 

Annotation confidence Not enough data

Genome context

CM000346.2: 2022789-2023023 [+]

Mature ptc-miR7831

• Accession: MIMAT0030390
• Description: Populus trichocarpa ptc-miR7831 mature miRNA
• Sequence: 21 - UACAUGUAGAGACCACCAAAC - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233