Stem-loop ptc-MIR6463

Accession

MI0021969

Description

Populus trichocarpa ptc-MIR6463 precursor miRNA

Sequence

cauuguaggacauucgucggcaaccauuuagucauguuugcuaacaugaccguccaaguuaucaauuaugucagguuacauuaaggaagcuggcaugagcaugccaucaaaguuguugacauguuugucaucuUGGAUGAUCAUGUUGGCAACCauguugaugugguagaucaugugcugcguaug
((((((((.((((..(((....(((((((((.((((.((((((((((((.((((((((....(((.(((((((....(((.....((...((((((....)))))))).....)))))))))).)))....)))))))).)))))))))))).)))))))).))))).))).)))).))))).)))

Structure

   -     g    uc   ggca     -    u    u            c        uuau   u       gguu   uuaag  agc      g 
cau uguag acau  guc    accau uuag caug uugcuaacauga cguccaag    caa uauguca    aca     ga   uggcau a
||| ||||| ||||  |||    ||||| |||| |||| |||||||||||| ||||||||    ||| |||||||    |||     ||   ||||||  
gua gcguc ugua  uag    uggug aguu guaC AACGGUUGUACU GUAGGUuc    guu guacagu    ugu     cu   accgua g
   u     g    -c   ---a     u    -    C            A        uacu   u       ----   ugaaa  ---      c 

Annotation confidence Not enough data

Genome context

CM000340.2: 6132645-6132830 [+]

Mature ptc-miR6463

• Accession: MIMAT0025189
• Description: Populus trichocarpa ptc-miR6463 mature miRNA
• Sequence: 134 - UGGAUGAUCAUGUUGGCAACC - 154
• Evidence: experimental ; miRNAseq [1], Illumina [2]

References

1. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034


2. PubMed ID: 23570526
   Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis
   Shuai P, Liang D, Zhang Z, Yin W, Xia X
   BMC Genomics (2013) 14:233