Stem-loop ptc-MIR171l

Accession

MI0007032

Description

Populus trichocarpa ptc-MIR171l precursor miRNA

Literature search

7 open access papers mention ptc-MIR171l
(13 sentences)

Sequence

9886 reads, 171.0 reads per million, 9 experiments

ggagaaguagacacggUGUGAUAUUGGUCCGGCUCAUCUucugugcauaagcaucugaaguucuucacucaugaagaCGAGCCGAAUCAAUAUCACUCUuguaugcuucuuc
(((((((((.(((.((.(((((((((((.((((((..((((.((((....))))..)))).((((((....)))))).)))))).))))))))))).))))).)))))))))

Structure

         g   c  U           C      ----------------AU    -u    a 
ggagaagua aca gg GUGAUAUUGGU CGGCUC                  CUuc  gugc u
||||||||| ||| || ||||||||||| ||||||                  ||||  ||||  
cuucuucgu ugu UC CACUAUAACUA GCCGAG                  gaag  uacg a
         a   -  U           A      Cagaaguacucacuucuu    uc    a 

Annotation confidence High

Genome context

CM000351.2: 654599-654710 [+]

Mature ptc-miR171l-5p

• Accession: MIMAT0002095
• Description: Populus trichocarpa ptc-miR171l-5p mature miRNA
• Sequence: 17 - UGUGAUAUUGGUCCGGCUCAUCU - 39
• Evidence: experimental ; cloned [1], Northern [1]

Mature ptc-miR171l-3p

• Accession: MIMAT0005994
• Description: Populus trichocarpa ptc-miR171l-3p mature miRNA
• Sequence: 78 - CGAGCCGAAUCAAUAUCACUCU - 99
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151