Stem-loop ptc-MIR169x

Accession

MI0002274

Description

Populus trichocarpa ptc-MIR169x precursor miRNA

Literature search

9 open access papers mention ptc-MIR169x
(12 sentences)

Sequence

ugcuguuuucUAGCCAAGGAUGACUUGCUCGuuagcccuugaaagauguuucaaauuuaggcugcauaugcucagaaccuuuuucuggcuucaggcaaucaucuuggcuaaaugacag
..(((((...((((((((.((((.(((((...(((((.((((((....)))))).....))))).....((.(((((.....)))))))....)))))))))))))))))...)))))

Structure

ug     uuc        G    C     --------------------------CGu     ----c      g 
  cuguu   UAGCCAAG AUGA UUGCU                             uagcc     uugaaa a
  |||||   |||||||| |||| |||||                             |||||     ||||||  
  gacag   aucgguuc uacu aacgg                             gucgg     aacuuu u
--     uaa        -    -     acuucggucuuuuuccaagacucguauac     auuua      g 

Annotation confidence Not enough data

Genome context

CM000343.2: 6023427-6023544 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR169x

Mature ptc-miR169x

• Accession: MIMAT0001980
• Description: Populus trichocarpa ptc-miR169x mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCUCG - 31
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604