Stem-loop sequence ppe-MIR395b

Accession

MI0026104 (change log)

Description

Prunus persica miR395b stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395b
(13 sentences)

Stem-loop

          ag c  u  a                  u      u  -----uuau      uauc 
5' aucagau  c cc ag guucccucaaacacuuca uggaga ua         gggcau    u
   |||||||  | || || |||||||||||||||||| |||||| ||         ||||||     
3' uaguuua  g gg uc cagggggguuugugaagu aucuuu au         uccgua    u
          cu a  u  c                  c      c  cucucucuc      uuaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27773971-27774095 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395b

• ppe-MIR395d: chrG1: 27764041-27764256 [-]
• ppe-MIR395c: chrG1: 27764279-27764386 [-]
• ppe-MIR395i: chrG1: 27764456-27764573 [-]
• ppe-MIR395n: chrG1: 27764648-27764750 [-]
• ppe-MIR395o: chrG1: 27768992-27769074 [+]
• ppe-MIR395b: chrG1: 27773971-27774095 [+]
• ppe-MIR395k: chrG1: 27779990-27780084 [-]
• ppe-MIR395f: chrG1: 27781156-27781289 [+]

Database links

• miRBase Tracker:MI0026104

Mature sequence ppe-miR395b-5p

• Accession: MIMAT0031479
• Sequence: 18 - guucccucaaacacuucauu - 37
• Evidence: experimental; Illumina [1]

Mature sequence ppe-miR395b-3p

• Accession: MIMAT0031480
• Sequence: 90 - cugaaguguuuggggggaccc - 110
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).