Stem-loop sequence ppe-MIR395d

Accession

MI0026106 (change log)

Description

Prunus persica miR395d stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention ppe-MIR395d
(15 sentences)

Stem-loop

   --auccgugguaauguacuuauuguagaagcugugaugaaaaaagaggaaa  uu              a         ug c       u     --a      c  u 
5'                                                    ua  gucaggugucaccg gaguucucu  a cacuuca uggga   auaauu au c
                                                      ||  |||||||||||||| |||||||||  | ||||||| |||||   |||||| ||  
3'                                                    au  uaguuuacgguggu cucaagggg  u gugaagu acccu   uauuaa ua u
   uagguaccgccaccuauacaccuuucgaacauucucgaaacaauaagaaac  uu              c         gu u       c     aua      c  g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27764041-27764256 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395d

• ppe-MIR395b: chrG1: 27773971-27774095 [+]
• ppe-MIR395o: chrG1: 27768992-27769074 [+]
• ppe-MIR395n: chrG1: 27764648-27764750 [-]
• ppe-MIR395i: chrG1: 27764456-27764573 [-]
• ppe-MIR395c: chrG1: 27764279-27764386 [-]
• ppe-MIR395d: chrG1: 27764041-27764256 [-]
• ppe-MIR395j: chrG1: 27754874-27754989 [-]

Database links

• miRBase Tracker:MI0026106

Mature sequence ppe-miR395d

• Accession: MIMAT0031482
• Sequence: 126 - cugaaguguuugggggaacuc - 146
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).