Stem-loop sequence ppe-MIR395j

Accession

MI0026112 (change log)

Description

Prunus persica miR395j stem-loop

Gene family

MIPF0000016; MIR395

Literature search

3 open access papers mention ppe-MIR395j
(13 sentences)

Stem-loop

        u  -uu  ug         ug         u     -      uaa     guu 
5' gucag ug   cc  gaguucccu  aacacuuca ugggg aaauua   gggua   c
   ||||| ||   ||  |||||||||  ||||||||| ||||| ||||||   |||||   a
3' caguc ac   gg  cucaagggg  uugugaagu auccu uuuaau   uccau   u
        u  uau  gu         gu         c     a      ---     gua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Prunus_persica_NCBIv2; GCA_000346465.2): chrG1: 27754874-27754989 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ppe-MIR395j

• ppe-MIR395n: chrG1: 27764648-27764750 [-]
• ppe-MIR395i: chrG1: 27764456-27764573 [-]
• ppe-MIR395c: chrG1: 27764279-27764386 [-]
• ppe-MIR395d: chrG1: 27764041-27764256 [-]
• ppe-MIR395j: chrG1: 27754874-27754989 [-]

Database links

• miRBase Tracker:MI0026112

Mature sequence ppe-miR395j

• Accession: MIMAT0031488
• Sequence: 81 - cugaaguguuugggggaacuc - 101
• Evidence: experimental; Illumina [1]

References

1. PMID:22909020 "Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs" Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z BMC Plant Biol. 12:149(2012).