miRBase entry: ppe-MIR535a

Stem-loop ppe-MIR535a


Accession
MI0026138
Description
Prunus persica ppe-MIR535a precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
3 open access papers mention ppe-MIR535a
(5 sentences)

Sequence

ugauugacguuguuUGACAACGAGAGAGAGCACGCuugucggcacccaugaaagggccauggauguuuacgggcgugcucucucuuguugucaugcagucuauca
((((.(((..(((.(((((((((((((((((((((((((.((((.(((((.......))))).)))).))))))))))))))))))))))))).)))))).))))

Structure
    u   gu   u                         c    c     aa 
ugau gac  ugu UGACAACGAGAGAGAGCACGCuugu ggca ccaug  a
|||| |||  ||| ||||||||||||||||||||||||| |||| |||||  g
acua cug  acg acuguuguucucucucgugcgggca uugu gguac  g
    u   --   u                         u    a     cg 


Annotation confidence Not enough data
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Genome context
chrG8: 18434050-18434154 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppe-MIR535a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppe-miR535a

Accession MIMAT0031514
Description Prunus persica ppe-miR535a mature miRNA
Sequence 15 - UGACAACGAGAGAGAGCACGC - 35
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22909020
    Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
    Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
    BMC Plant Biol (2012) 12:149