Stem-loop ppe-MIR8130

Accession

MI0026163

Description

Prunus persica ppe-MIR8130 precursor miRNA

Sequence

cauagaaugucuauuuguuguguuuuugguuuugucaugauuggauaucucguccuuugauguccggugugacaaaguGGGUUCCUUGUUGGAAGGACUcagccacucuuccaacguggauucaaaauucggauggcagacagcagcccaCCCUUCCAGUAAGGCACCCCCcuugucaccgaacaaacaucaaggcacgagauauccgaucaugacaaaacgaaaaagacgacaaaugcacauucucug
((.(((((((.((((((((((.(((((.(((((((((((((((((((((((((.(((((((((..(..(((((((.(.((((.(((((((((((((......((((.........))))((((.......))))(((........)))...))))))))))))).)))).).)))))))....)..))))))))).))))))))))))))))))))))))).))))).)))))))))).))))))).))

Structure

  u       c          g     g                         c         cc --gu       a u    U             --------------------------ACUcag    ucu 
ca agaaugu uauuuguugu uuuuu guuuugucaugauuggauaucucgu cuuugaugu  g    gugacaa g GGGU CCUUGUUGGAAGG                                ccac   u
|| ||||||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||  |    ||||||| | |||| |||||||||||||                                ||||   c
gu ucuuaca guaaacagca aaaaa caaaacaguacuagccuauagagca ggaacuaca  c    cacuguu C CCCA GGAAUGACCUUCC                                ggug   c
  c       c          g     g                         c         aa aagc       c C    C             Cacccgacgacagacgguaggcuuaaaacuua    caa 

Annotation confidence Not enough data

Genome context

chrG5: 13056273-13056521 [+]

Mature ppe-miR8130-5p

• Accession: MIMAT0031556
• Description: Prunus persica ppe-miR8130-5p mature miRNA
• Sequence: 79 - GGGUUCCUUGUUGGAAGGACU - 99
• Evidence: experimental ; Illumina [1]

Mature ppe-miR8130-3p

• Accession: MIMAT0031557
• Description: Prunus persica ppe-miR8130-3p mature miRNA
• Sequence: 151 - CCCUUCCAGUAAGGCACCCCC - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149