miRBase entry: ath-MIR8172

Stem-loop ath-MIR8172


Accession
MI0026802
Description
Arabidopsis thaliana ath-MIR8172 precursor miRNA


Sequence

auccaaaaaguuacuaggccuuguuuguuucuccauccauAUGGAUCAUCUAGAUGGAGAUgaaaaaugauguuuguuuuuuacaaauuaacagaucauuuagaugaaucauuuggauguuccaugugaaugacuuuguaaauuuaggcuaauuugugaaacucauuuggau
(((((((.((((((..(((((.(((((......(((.((((((((.(((((((((((.......(((((((((((((.....))))))......))))))).......))))))))))).)))))))).)))......)))))..))))).....)))..)))..)))))))

Structure
       -a   --   ---ua     -u     uuucuc   c        U           AGAUgaa       ------      u 
auccaaa  agu  uac     ggccu  guuug      cau cauAUGGA CAUCUAGAUGG       aaaugau      guuugu u
|||||||  |||  |||     |||||  |||||      ||| |||||||| |||||||||||       |||||||      |||||| u
uagguuu  uca  gug     ucgga  uaaau      gua guguaccu guagguuuacu       uuuacua      uaaaca u
       ac   aa   uuuaa     uu     guuuca   a        u           aaguaga       gacaau      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 7102461-7102632 [-]

Database links

Mature ath-miR8172

Accession MIMAT0032771
Description Arabidopsis thaliana ath-miR8172 mature miRNA
Sequence 41 - AUGGAUCAUCUAGAUGGAGAU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701