miRBase entry: sma-mir-125c

Stem-loop sma-mir-125c


Accession
MI0027196
Description
Schistosoma mansoni sma-mir-125c precursor miRNA

Literature search
3 open access papers mention sma-mir-125c
(5 sentences)

Sequence

cuugcguugcauuguauuccguaUCCCUGAGACCUUAGAGUUGUCcuguuuugaauuauuuucgauuauuauaaaaaagauugaCACCUCUACGGUAUCAGGUCACGgaauaaugcuaaacaacau
.(((....(((((((..(((((...(((((.(((.(((((.((((..(((((...((((...........))))..))))).)))).))))).))).)))))..))))))))))))....)))...

Structure
--c   cguu       au     aUC     G   U     U    cu     gaa    uuuc 
   uug    gcauugu  uccgu   CCUGA ACC UAGAG UGUC  guuuu   uuau    g
   |||    |||||||  |||||   ||||| ||| ||||| ||||  |||||   ||||    a
   aac    cguaaua  agGCA   GGACU UGG AUCUC ACag  uagaa   aaua    u
uac   aaau       --     -CU     A   C     C    -u     -aa    uuau 


Annotation confidence Not enough data
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Genome context
Chr_1: 34097074-34097199 [-]

Database links

Mature sma-miR-125c-5p

Accession MIMAT0033510
Description Schistosoma mansoni sma-miR-125c-5p mature miRNA
Sequence 24 - UCCCUGAGACCUUAGAGUUGUC - 45
Evidence experimental
Illumina [1], SOLiD [1]

Mature sma-miR-125c-3p

Accession MIMAT0033511
Description Schistosoma mansoni sma-miR-125c-3p mature miRNA
Sequence 85 - CACCUCUACGGUAUCAGGUCACG - 107
Evidence experimental
Illumina [1], SOLiD [1]

References

  1. PubMed ID: 24069470
    Sex-biased expression of microRNAs in Schistosoma mansoni
    Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M
    PLoS Negl Trop Dis (2013) 7:e2402