Stem-loop gra-MIR8635

Accession

MI0027580

Description

Gossypium raimondii gra-MIR8635 precursor miRNA

Sequence

gaguucggucUCGGAUCUUCAAACGGUGGAGaaauuuugaccggagugucuaaguucaauuuuaguucuagguugucucuugauucugaggaaagcccaacggguuuacagaguuuggggaguaccucaugacuaaggaaauaugagcauucggccuugcuggaguuugaacccauguuuuuuauauggcauuaguggguaagaacuccacuaaaggcauggguuggaaucuuaucaaggccaaaauuuuuaacauuucuccccaaacuuugugaaucuguuaggcuugagagacaaaacuugaggcuaaaaucaaauauagaugccucgagcacaauacuuccacuguuugaggguccaagacugaccucc
(((.(((((((.(((((((((((((((((((..(((.((..(((.(((((((.(((..(((((((((.(((((((((((((...........(((((.((((((((((((((((((((((((...((((((.(....)...)))))).....(((((((.(((.((((.((((((((((((...........((((((((....)).)))))))))))))))))).)))).))).)))))))................)))))))))))))))))))))))).)))))))))))))..))))).)))))))))..))).))))))).)))..)).)))..))))))))))))))))))).))))))).))).

Structure

-   u       C                   aa   u  ac   a       a   ca         c     --        gauucugagga     c                        uaccucaugacuaaggaaauaugagcauuc       c   a    g            uuauauggcau      -  a 
 gag ucggucU GGAUCUUCAAACGGUGGAG  auu ug  cgg gugucua guu  auuuuaguu uaggu  ugucucuu           aagcc aacggguuuacagaguuuggggag                              ggccuug ugg guuu aacccauguuuu           uagugg gu a
 ||| ||||||| |||||||||||||||||||  ||| ||  ||| ||||||| |||  ||||||||| |||||  ||||||||           ||||| ||||||||||||||||||||||||                              ||||||| ||| |||| ||||||||||||           |||||| ||  
 cuc agucaga ccugggaguuugucaccuu  uaa ac  gcu cguagau uaa  uaaaaucgg guuca  acagagag           uucgg uugucuaaguguuucaaaccccuc                              ccggaac auu uaag uuggguacggaa           aucacc ca g
c   c       a                   ca   c  ga   c       a   ac         a     aa        -----------     a                        --------------uuuacaauuuuuaaaa       u   c    g            -----------      u  a 

Annotation confidence Not enough data

Genome context

chr11: 1104959-1105330 [+]

Mature gra-miR8635

• Accession: MIMAT0033985
• Description: Gossypium raimondii gra-miR8635 mature miRNA
• Sequence: 11 - UCGGAUCUUCAAACGGUGGAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629