Stem-loop gra-MIR8639b

Accession

MI0027585

Description

Gossypium raimondii gra-MIR8639b precursor miRNA

Gene family

MIPF0001883; MIR8639

Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaacucuuucaagcuuccaauauauacuaaccagauuuuaguaaugaaacugacuuuuauauuuaauuauuugaaaaauauaaaaaaauuuagacaaaaacaaauuccauauuugucacuuaaaagaauuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.((((((((((((((((((((((((((((((((((((((.(((((.(((..................(((.(((((....))))))))..((((((((((...........)))))))))).......((((((.............)))))).))).))))).))))))))))))))))))))))))))))))))))))))

Structure

g                                      c     c   cuuccaauauauacuaaccagauuuuaguaaugaaacugac          aauu 
 uaauggaagacuuguuuaauucuacuuauguuuaacaa ucuuu aag                                         uuuuauauuu    a
 |||||||||||||||||||||||||||||||||||||| ||||| |||                                         ||||||||||    u
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguu agaaa uuc                                         aaaauauaaa    u
-                                      a     a   --------acuguuuauaccuuaaacaaaaacagauuuaaa          aagu 

Annotation confidence Not enough data

Genome context

chr11: 56636473-56636674 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8639b

Mature gra-miR8639b

• Accession: MIMAT0033990
• Description: Gossypium raimondii gra-miR8639b mature miRNA
• Sequence: 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629