Stem-loop gra-MIR8639c

Accession

MI0027586

Description

Gossypium raimondii gra-MIR8639c precursor miRNA

Gene family

MIPF0001883; MIR8639

Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagugacaaauauggaauuuguuuuugucuaaauuuuuuuauauuuuucaaauaauuaaauauaaaagucaguuucauuacuaaaaucugguuaguauauauuggaagcuugaaagaguuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((.............))))))......(((((((((((...........)))))))))))(((((.....((((((.......))))))...)))))..)))))))))))))))))))))))))))))))))))))))))))))))))

Structure

g                                                 --------gacaaauauggaauuuguuuuugucuaaauu           uuca 
 uaauggaagacuuguuuaauucuacuuauguuuaacaauucuuuuaagu                                       uuuuuauauuu    a
 |||||||||||||||||||||||||||||||||||||||||||||||||                                       |||||||||||    a
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguugagaaaguucg                                       gaaaauauaaa    u
-                                                 aagguuauauaugauuggucuaaaaucauuacuuugacu           uuaa 

Annotation confidence Not enough data

Genome context

chr11: 56636474-56636675 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8639c

Mature gra-miR8639c

• Accession: MIMAT0033991
• Description: Gossypium raimondii gra-miR8639c mature miRNA
• Sequence: 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629