Stem-loop gra-MIR8639f

Accession

MI0027587

Description

Gossypium raimondii gra-MIR8639f precursor miRNA

Gene family

MIPF0001883; MIR8639

Sequence

guaauggaagacuuguuuaauucuacuuauguuuaacaacucuuuuaagugacaaauaugaaaguuguuuuugucuaauuuuuuuuauauuuuucaaaugauuaaauauaaaagucaguuucauuacuaaaaucugguuaguauauauuggaagcuuaaaagaguuguUAAACAUAAGUAGAAUUAAACAAGucuuccauua
.(((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((...)))).))))))......(((((((((((.((....))..)))))))))))(((((.....((((((.......))))))...)))))..)))))))))))))))))))))))))))))))))))))))))))))))))

Structure

g                                                 --------gacaaauaugaaaguuguuuuugucuaauuu           -u  a 
 uaauggaagacuuguuuaauucuacuuauguuuaacaacucuuuuaagu                                       uuuuuauauuu  uc a
 |||||||||||||||||||||||||||||||||||||||||||||||||                                       |||||||||||  ||  
 auuaccuucuGAACAAAUUAAGAUGAAUACAAAUuguugagaaaauucg                                       gaaaauauaaa  ag a
-                                                 aagguuauauaugauuggucuaaaaucauuacuuugacu           uu  u 

Annotation confidence Not enough data

Genome context

chr2: 31172755-31172956 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gra-MIR8639f

Mature gra-miR8639f

• Accession: MIMAT0033992
• Description: Gossypium raimondii gra-miR8639f mature miRNA
• Sequence: 169 - UAAACAUAAGUAGAAUUAAACAAG - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629