Stem-loop gra-MIR8642

Accession

MI0027593

Description

Gossypium raimondii gra-MIR8642 precursor miRNA

Sequence

gauauuaacguuugaauccauuucuauuuuggucgcccauuguuaaauugauaacaaagagccuuuuucuaauggguacaauaacacauuuaaaacauacgugaucaaaacaguuaaaaaagacuuuucguuaucaauuuaauggcaagUGAUCAAAACAGGAACGAAUUCAAacgcuaauau
.((((((.(((((((((.(.(((((.((((((((((...((((((((((((((((.(((((.((((((.((((..((.......(((.............)))......)).)))))))))).))))).))))))))))))))))...)))))))))).))))).).))))))))).))))))

Structure

g      a         c a     a          cca                a     c      c    gg  acaauaa   auuua 
 auauua cguuugaau c uuucu uuuuggucgc   uuguuaaauugauaac aagag cuuuuu uaau  gu       cac     a
 |||||| ||||||||| | ||||| ||||||||||   |||||||||||||||| ||||| |||||| ||||  ||       |||     a
 uauaau gcaAACUUA G AAGGA AAAACUAGUg   gguaauuuaacuauug uuuuc gaaaaa auug  ca       gug     a
-      c         A C     C          aac                c     a      -    -a  -aaacua   cauac 

Annotation confidence Not enough data

Genome context

chr5: 4343457-4343639 [+]

Mature gra-miR8642

• Accession: MIMAT0033998
• Description: Gossypium raimondii gra-miR8642 mature miRNA
• Sequence: 150 - UGAUCAAAACAGGAACGAAUUCAA - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629