Stem-loop gra-MIR8652

Accession

MI0027606

Description

Gossypium raimondii gra-MIR8652 precursor miRNA

Sequence

auuugguacaAUUAUGUGUAUGAAACUUUAGUUgugguuuaaagaaguaaauauauuuauuuauuuucauauugaaauaauauaauuguuuauuugcguaauauauaaacguaaaauauuguuacauggauaauuuuuguagugguuuguaaaaaucaauuacaaccaaaauuuaauauacauaauuacacuaaauc
(((((((..((((((((((((.(((.(((.((((((((.....((((((((((....)))))))))).......(((((((...))))))).(((((((.........)))))))......(((((...........)))))((((((....)))))))))))))).))).))).))))))))))))..))))))).

Structure

-       ac            G   C   A        --------------------------------------------------------------------------------------uuaaa          u 
 auuuggu  aAUUAUGUGUAU AAA UUU GUUguggu                                                                                           gaaguaaaua a
 |||||||  |||||||||||| ||| ||| ||||||||                                                                                           ||||||||||  
 uaaauca  uuaauacauaua uuu aaa caacauua                                                                                           uuuuauuuau u
c       ca            a   a   c        acuaaaaauguuuggugauguuuuuaauagguacauuguuauaaaaugcaaauauauaaugcguuuauuuguuaauauaauaaaguuauac          u 

Annotation confidence Not enough data

Genome context

chr9: 66471842-66472038 [-]

Mature gra-miR8652

• Accession: MIMAT0034011
• Description: Gossypium raimondii gra-miR8652 mature miRNA
• Sequence: 11 - AUUAUGUGUAUGAAACUUUAGUU - 33
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629