Stem-loop gra-MIR8657c

Accession

MI0027618

Description

Gossypium raimondii gra-MIR8657c precursor miRNA

Gene family

MIPF0001902; MIR8657

Sequence

uggacuaaauUGUAGUAAUUGUAGAAGUUCAGGGacuauucuguuauuuucccuuuuucacuaguaucuacaagaucuugaucuagaauauaaaauuacucauuuauuagcauauauuuuauuuccaaacuauuuuacaaugaauacccuuuuauuuuuuugaauuuauacaauuacccuaaacuuuuacauuuuuugcaauuuaauccc
.(((.((((((((((.((.((((((((((.((((.......(((((..(((...........((.((((...)))))).((..(((((((((....................)))))))))..)).............((((((......)))))).....)))..)).)))....)))).)))))))))).)).)))))))))).))).

Structure

u   c          U  U          C    acuauuc   -  uu   --------ccuuuuucacuaguaucuacaagaucuu  uc         aaauuacuc 
 gga uaaauUGUAG AA UGUAGAAGUU AGGG       ugu ua  uuc                                    ga  uagaauaua         a
 ||| |||||||||| || |||||||||| ||||       ||| ||  |||                                    ||  |||||||||          
 ccu auuuaacguu uu acauuuucaa uccc       aca au  aag                                    cu  auuuuauau         u
c   a          u  u          a    ---auua   u  uu   uuuuuuuauuuucccauaaguaacauuuuaucaaac  uu         acgauuauu 

Annotation confidence Not enough data

Genome context

chr8: 44962404-44962613 [-]

Mature gra-miR8657c

• Accession: MIMAT0034023
• Description: Gossypium raimondii gra-miR8657c mature miRNA
• Sequence: 11 - UGUAGUAAUUGUAGAAGUUCAGGG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629