Stem-loop gra-MIR8658

Accession

MI0027621

Description

Gossypium raimondii gra-MIR8658 precursor miRNA

Sequence

aaaaugugccuauaaucccugucuuuucuaaaauuuggaauuuaacaucuuuacuucucagauuuuaaaauucaaauuuaacaauuguuaauuuuuuuuuuuuaacuacucacuugguagccaugugaaacugaauuuugaaaucugaaccuaaaaauacaagcacaaggacuaaauuucuaauuUUUGAAAAGUACAGGGACUAUaggcauguuu
.(((((((((((((.(((((((((((((.((((((.((((((((...(((((.(((.(((((((((((((((((...(((((....)))))..................((((.(((...))).))))...)))))))))))))))))............)))...))))).)))))))).)))))).)))))).))))))).)))))))))))))

Structure

a             a       -      u      u        aca     --a   -----------c                 aauuuaacaauuguuaauuuuuuuuuuuuaacuac    u   u 
 aaaugugccuaua ucccugu cuuuuc aaaauu ggaauuua   ucuuu   cuu            ucagauuuuaaaauuca                                   ucac ugg  
 ||||||||||||| ||||||| |||||| |||||| ||||||||   |||||   |||            |||||||||||||||||                                   |||| ||| a
 uuuguacggaUAU AGGGACA GAAAAG UUuuaa cuuuaaau   aggaa   gaa            agucuaaaguuuuaagu                                   agug acc  
-             C       U      U      u        --c     cac   cauaaaaaucca                 --------------------------------caa    u   g 

Annotation confidence Not enough data

Genome context

chr10: 881077-881292 [+]

Mature gra-miR8658

• Accession: MIMAT0034026
• Description: Gossypium raimondii gra-miR8658 mature miRNA
• Sequence: 186 - UUUGAAAAGUACAGGGACUAU - 206
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629