Stem-loop gra-MIR8673

Accession

MI0027640

Description

Gossypium raimondii gra-MIR8673 precursor miRNA

Sequence

aauaacaaauuuagccuuugauguuuacauauuuuguuaauuuggccuuaauucuaaaaauuuagccucaauauuuacacauuugcacaaacauugugagcuaaauuuauuaaaucaggaccaaguuagcAAGAUAUGUAAACCUUGAGGGCUAaauuuauuau
.((((.(((((((((((((((.((((((((((((((((((((((((((..(((..(.((((((((((.((((.(((.((....))...))).)))).).))))))))).)..))).))).))))))))))))))))))))))).))))))))))))))).))))

Structure

a    c               u                       -   ua   cu a         - u    a   --a  c 
 auaa aaauuuagccuuuga guuuacauauuuuguuaauuugg ccu  auu  a aaauuuagc c caau uuu   ca a
 |||| ||||||||||||||| ||||||||||||||||||||||| |||  |||  | ||||||||| | |||| |||   ||  
 uauu uuuaaAUCGGGAGUU CAAAUGUAUAGAAcgauugaacc gga  uaa  u uuuaaaucg g guua aaa   gu u
-    a               C                       a   -c   au a         a u    c   cac  u 

Annotation confidence Not enough data

Genome context

chr8: 20127854-20128017 [-]

Mature gra-miR8673

• Accession: MIMAT0034045
• Description: Gossypium raimondii gra-miR8673 mature miRNA
• Sequence: 131 - AAGAUAUGUAAACCUUGAGGGCUA - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629