Stem-loop gra-MIR8687

Accession

MI0027655

Description

Gossypium raimondii gra-MIR8687 precursor miRNA

Sequence

uguuuuuaagAGAGACAAAAGAAACACGUUCUACaaggaacguuuucaucgaugugguauugaaaacauguccuguaagacguguuuucacuuuguuaaaauuauuuucauucugucauaaguuuuaguaucgaugauuauacagucuauaugggaauuuuuuuuuaacaaagugaaaaugagucuuacaaggcauguuuucacugccauauuagugaaaacgugccuuguaggacgcguuuuuuguuucucucucuaaaaauaa
(((((((((((((((...(((((((.((((((((((((.((((((((((.(((((((((.((((((((((((.((((((((.(((((((((((((((((((..((((((((.((((.((((...((......))...)))))))).....))))))))....))))))))))))))))))).)))))))).)))))))))))).))))))))).)))))))))).)))))))))))).)))))))...))))))).)))))))).

Structure

-        -       CAA       A            a          c         u            c        g                   --uu        ----u    c    guu  ag 
 uguuuuua agAGAGA   AAGAAAC CGUUCUACaagg acguuuucau gauguggua ugaaaacauguc uguaagac uguuuucacuuuguuaaaa    auuuucau     cugu auaa   uu  u
 |||||||| |||||||   ||||||| |||||||||||| |||||||||| ||||||||| |||||||||||| |||||||| |||||||||||||||||||    ||||||||     |||| ||||   ||   
 auaaaaau ucucucu   uuuuuug gcaggauguucc ugcaaaagug uuauaccgu acuuuuguacgg acauucug guaaaagugaaacaauuuu    uaagggua     gaca uauu   ag  a
a        c       uug       c            g          a         c            a        a                   uuuu        uaucu    -    agu  cu 

Annotation confidence Not enough data

Genome context

chr9: 23427974-23428238 [-]

Mature gra-miR8687

• Accession: MIMAT0034060
• Description: Gossypium raimondii gra-miR8687 mature miRNA
• Sequence: 11 - AGAGACAAAAGAAACACGUUCUAC - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629