Stem-loop gra-MIR7494b

Accession

MI0027657

Description

Gossypium raimondii gra-MIR7494b precursor miRNA

Gene family

MIPF0001879; MIR7494

Sequence

accuuuuuuuuuuccauucucuucuauuucccccuuuguuuuccuccuuucuucauuucuuuuaauguaaauuuucuauguuuccuauuuguuaaaacuaguccacgagcucgccucacucaaaaaaauuaaauuguucaaaaacauaaaaguauagggacuaguuuuaacaaaugaaaaacauagaaaaacuacguuaaaagaaauggggaacggaggaaaacAGAGGGAGAAGCAGAAGAGAAUAaaaaaaaagg
.(((((((((((...((((((((((.((((.((((((((((((((((.(((((((((((((((((((((..((((((((((((..(((((((((((((((((((..(((.....))).................((((....))))...........)))))))))))))))))))..))))))))))))..))))))))))))))))))))).)))))))))))))))).)))).)))))))))))))))))))))

Structure

a           ucc          a    c                u                     aa            cc                   acgagcucgccucacucaaaaaaauuaaau    c 
 ccuuuuuuuuu   auucucuucu uuuc cccuuuguuuuccucc uucuucauuucuuuuaaugua  uuuucuauguuu  uauuuguuaaaacuagucc                              uguu a
 |||||||||||   |||||||||| |||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||  |||||||||||||||||||                              ||||  
 ggaaaaaaaaA   UAAGAGAAGA GAAG GGGAGAcaaaaggagg aagggguaaagaaaauugcau  aaaagauacaaa  guaaacaauuuugaucagg                              acaa a
-           ---          C    A                c                     ca            aa                   -------------------gauaugaaaau    a 

Annotation confidence Not enough data

Genome context

chr2: 17985936-17986192 [+]

Mature gra-miR7494b

• Accession: MIMAT0034062
• Description: Gossypium raimondii gra-miR7494b mature miRNA
• Sequence: 225 - AGAGGGAGAAGCAGAAGAGAAUA - 247
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629