Stem-loop gra-MIR8691

Accession

MI0027659

Description

Gossypium raimondii gra-MIR8691 precursor miRNA

Sequence

ugcuuuuuuuAGAUGAUGAGAAAGGAAAGUCAAGaugaaugaacaaguuugauuuuuauuugauugguuuguuauguucauguuagucugguaaaaagucuuaaacuaggucugaggauuuaaucugugcuucuucuuuguuggaauuuucuuuuuuuuuauuuggaaauuauu
.....(((((((((((.(((((((((((.((..((((((.((.(.(((((((((((((((.((((((..((.......))..)))))).))))))))...))))))).).)).(((((.............))))))))))).)).))))))))))).))))))))))).....

Structure

ugcuu           U           G  AA      -----------------------u  a a       ---        u      uu  uu 
     uuuuuAGAUGA GAGAAAGGAAA UC  Gaugaa                        ga c aguuuga   uuuuuauu gauugg  ug  a
     ||||||||||| ||||||||||| ||  ||||||                        || | |||||||   |||||||| ||||||  ||  u
     aaagguuuauu uuuuuucuuuu ag  uuguuu                        cu g ucaaauu   aaaaaugg cugauu  ac  g
uuauu           u           a  -g      cuucuucgugucuaauuuaggagu  g a       cug        u      gu  uu 

Annotation confidence Not enough data

Genome context

chr4: 19643915-19644088 [+]

Mature gra-miR8691

• Accession: MIMAT0034064
• Description: Gossypium raimondii gra-miR8691 mature miRNA
• Sequence: 11 - AGAUGAUGAGAAAGGAAAGUCAAG - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629