Stem-loop gra-MIR8699

Accession

MI0027675

Description

Gossypium raimondii gra-MIR8699 precursor miRNA

Sequence

auuuggucguuuuauguuuuguuaaaaugauucuaauuguauuuuuugguuuuuuuucaaucuauuuuuucuaacaaauuuaaugaaaguaccguuaaaaaaauuaacggggaugauguaaauuuucauacauggaauauuuuuaaugagauguaauuuaucacuuagauaaccuaauaagauaauuauacgugaaaaauaaaaaaaauaaaaaaauaauacauuagauuaaaaaaacucuuaauuuaaagaaaauaaaaguaauuaucuaaaaaaauuaacucaguagaaaauuuucucaguaaaaaaacauacgaaagauuaaaaccuuuugaaagaaaagaaaauuugaaacauuaaauuuauuuauuaaaucuguuagaaaaagcaaaacaaauguugauggcaaaaaaaaagcucaaaaauacaauuAGGGCCAUUUUGACAAAACAUGCAaauguuaaug
..((((.((((((((((((((((((((((.((((((((((((((((.((((((((((........(((((((((((.((((((((((....(((((((.....))))))).((((...(((((((((.(((..((((.((((((..((((...((((((.....((((.....))))..((((((((((..((.....)).......................(((((((((........)))))))))...........))))))))))....)))))).))))...)))))).))))..)))..........((((((........))))))........)))))))))...)))).......)))))))))).)))))))))))((..(((....)))....))..)))))))))).)))))))))))))))).))))))))))))))))).)))))))))..

Structure

au    u     -                 a                u          --------------caaucuau           a          aguaccguuaaaaaaauuaacggg    aug         -------------------------------------a   au    u      -aa    aug      aucacuuagauaaccuaaua          acgugaaaaauaaaaaaaauaaaaaaauaauaca         aaa 
  uugg cguuu uauguuuuguuaaaaug uucuaauuguauuuuu gguuuuuuuu                      uuuuucuaaca auuuaaugaa                        gaug   uaaauuuuc                                      uac  ggaa auuuuu   ugag   uaauuu                    agauaauuau                                  uuagauuaa   a
  |||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||                      ||||||||||| ||||||||||                        ||||   |||||||||                                      |||  |||| ||||||   ||||   ||||||                    ||||||||||                                  |||||||||    
  aauu guaaA GUACAAAACAGUUUUAC GGGAuuaacauaaaaa ucgaaaaaaa                      aaaaagauugu uaaauuauuu                        uuac   guuuaaaag                                      aug  ucuu uaaaag   acuc   auuaaa                    ucuauuaaug                                  aauuuaauu   a
gu    -     C                 C                c          aacgguaguuguaaacaaaacg           c          -----------------auuuaaa    aaa         aaaagaaaguuuuccaaaauuagaaagcauacaaaaaa   ac    u      aug    --a      ----------------aaaa          -----------------------aaaauaaaaga         cuc 

Annotation confidence Not enough data

Genome context

chr11: 51833999-51834464 [-]

Mature gra-miR8699

• Accession: MIMAT0034080
• Description: Gossypium raimondii gra-miR8699 mature miRNA
• Sequence: 433 - AGGGCCAUUUUGACAAAACAUGCA - 456
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24044642
   Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells
   Xue W, Wang Z, Du M, Liu Y, Liu JY
   BMC Genomics (2013) 14:629